Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs7985716 chr13:54170860 T/A 0.000228 177 25.77 20.17 3.17 KM Plot
PCPG rs79893240 chr2:176156442 A/G 0.000115 178 25.28 28.95 6.62 KM Plot
PCPG rs7990278 chr13:64105474 T/C 3.05E-5 177 22.63 21.55 26.57 KM Plot
PCPG rs7991057 chr13:37579282 A/T 0.000285 178 4.17 24.7 25.7 KM Plot
PCPG rs7992180 chr13:54101741 C/T 0.000255 176 25.53 19.72 3.17 KM Plot
PCPG rs79951144 chr17:1418565 G/A 1.37E-5 176 24.7 25.87 13.02 KM Plot
PCPG rs79962550 chr2:61587303 T/TA 6.43E-5 178 23.43 29.88 10.3 KM Plot
PCPG rs79976723 chr10:131987377 G/A 0 174 25.53 25.33 3.17 KM Plot
PCPG rs79977946 chr7:66340755 C/T 0.000217 178 24.7 29.57 33.17 KM Plot
PCPG rs79997424 chr7:33697028 C/T 1.12E-7 177 25.28 25.43 19.87 KM Plot
PCPG rs8000534 chr13:37547009 A/G 0.000337 176 4.17 24.17 25.87 KM Plot
PCPG rs8000651 chr13:54234870 G/A 0.000367 170 25.87 29.43 3.17 KM Plot
PCPG rs80009529 chr16:71719013 G/A 8.89E-6 175 23.83 32.03 14.5 KM Plot
PCPG rs8002516 chr13:54135020 A/G 0.000244 176 25.67 19.72 3.17 KM Plot
PCPG rs80032725 chr16:90065555 AGCCACCTACTCCT/A 9.47E-9 173 25.77 20.37 6.62 KM Plot